{
  "_id": "6a20a299cd65a98ecbd17983",
  "Package": "mumarinex",
  "Title": "Computation of the Multivariate Marine Recovery Index",
  "Version": "2.0",
  "Authors@R": "person(\"Nathan\", \"Chauvel\", email = \"nathan.chauvel@outlook.fr\", role = c(\"aut\", \"cre\"), comment = c(ORCID = \"0000-0002-8464-9944\"))",
  "Description": "Computation of the multivariate marine recovery index,\nincluding functions for data visualization and ecological\ndiagnostics of marine ecosystems. The computational details are\ndescribed in the original publication.",
  "Reference": "Chauvel, N., Grall, J., Thiébaut, E., Houbin, C., Pezy,\nJ.-P., 2026. A general-purpose multivariate marine recovery\nindex (MUMARINEX) for quantifying the influence of human\nactivities on benthic habitat ecological status. Ecological\nIndicators 188, 115002.\nhttps://doi.org/10.1016/j.ecolind.2026.115002",
  "License": "GPL-3",
  "Encoding": "UTF-8",
  "Roxygen": "list(markdown = TRUE)",
  "RoxygenNote": "8.0.0",
  "VignetteBuilder": "knitr",
  "Collate": "'Simulated_data.R' 'decomplot.R' 'mumarinex.R'\n'diagnostic_tool.R' 'mum_GUI.R'",
  "URL": "https://github.com/Nathan-Chauvel/mumarinex",
  "BugReports": "https://github.com/Nathan-Chauvel/mumarinex/issues",
  "Repository": "https://nathan-chauvel.r-universe.dev",
  "Date/Publication": "2026-06-03 18:44:44 UTC",
  "RemoteUrl": "https://github.com/nathan-chauvel/mumarinex",
  "RemoteRef": "HEAD",
  "RemoteSha": "7d19ff353ccb37231f3d4233ec70f93f5d22973c",
  "NeedsCompilation": "no",
  "Packaged": {
    "Date": "2026-06-03 21:51:17 UTC",
    "User": "root"
  },
  "Author": "Nathan Chauvel [aut, cre] (ORCID:\n<https://orcid.org/0000-0002-8464-9944>)",
  "Maintainer": "Nathan Chauvel <nathan.chauvel@outlook.fr>",
  "MD5sum": "e077a586ca60af9616d7ab870137c336",
  "_user": "nathan-chauvel",
  "_type": "src",
  "_file": "mumarinex_2.0.tar.gz",
  "_fileid": "748aad287ab358f8ea503955272d1de4425f5a6452eda191cc4b57d0d5825f4a",
  "_filesize": 230877,
  "_sha256": "748aad287ab358f8ea503955272d1de4425f5a6452eda191cc4b57d0d5825f4a",
  "_created": "2026-06-03T21:51:17.000Z",
  "_published": "2026-06-03T21:54:33.044Z",
  "_distro": "noble",
  "_jobs": [
    {
      "job": 79403302029,
      "time": 125,
      "config": "linux-devel-x86_64",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "7397623676"
    },
    {
      "job": 79403302023,
      "time": 161,
      "config": "linux-release-x86_64",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7397633935"
    },
    {
      "job": 79403302037,
      "time": 78,
      "config": "macos-oldrel-arm64",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "7397609282"
    },
    {
      "job": 79403302024,
      "time": 131,
      "config": "macos-release-arm64",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7397625010"
    },
    {
      "job": 79402766694,
      "time": 201,
      "config": "source",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7397585228"
    },
    {
      "job": 79403302050,
      "time": 104,
      "config": "wasm-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7397617017"
    },
    {
      "job": 79403302046,
      "time": 91,
      "config": "windows-devel",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "7397613318"
    },
    {
      "job": 79403302075,
      "time": 116,
      "config": "windows-oldrel",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "7397620400"
    },
    {
      "job": 79403302113,
      "time": 87,
      "config": "windows-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7397612155"
    }
  ],
  "_buildurl": "https://github.com/r-universe/nathan-chauvel/actions/runs/26915081937",
  "_status": "success",
  "_host": "GitHub-Actions",
  "_upstream": "https://github.com/nathan-chauvel/mumarinex",
  "_commit": {
    "id": "7d19ff353ccb37231f3d4233ec70f93f5d22973c",
    "author": "Nathan-Chauvel <nathan.chauvel@outlook.fr>",
    "committer": "Nathan-Chauvel <nathan.chauvel@outlook.fr>",
    "message": "Merge branch 'master' of https://github.com/Nathan-Chauvel/mumarinex\n",
    "time": 1780512284
  },
  "_maintainer": {
    "name": "Nathan Chauvel",
    "email": "nathan.chauvel@outlook.fr",
    "login": "nathan-chauvel",
    "linkedin": "in/nathan-chauvel-02202a160",
    "description": "",
    "uuid": 280098866,
    "orcid": "0000-0002-8464-9944"
  },
  "_registered": true,
  "_dependencies": [
    {
      "package": "R",
      "version": ">= 3.5.0",
      "role": "Depends"
    },
    {
      "package": "knitr",
      "role": "Imports"
    },
    {
      "package": "vegan",
      "role": "Imports"
    },
    {
      "package": "utils",
      "role": "Imports"
    },
    {
      "package": "rmarkdown",
      "role": "Suggests"
    }
  ],
  "_owner": "nathan-chauvel",
  "_selfowned": true,
  "_usedby": 0,
  "_updates": [
    {
      "week": "2026-18",
      "n": 2
    },
    {
      "week": "2026-21",
      "n": 2
    },
    {
      "week": "2026-22",
      "n": 1
    },
    {
      "week": "2026-23",
      "n": 4
    }
  ],
  "_tags": [],
  "_stars": 0,
  "_contributors": [
    {
      "user": "nathan-chauvel",
      "count": 11,
      "uuid": 280098866
    }
  ],
  "_userbio": {
    "uuid": 280098866,
    "type": "user",
    "name": "Nathan Chauvel"
  },
  "_downloads": {
    "count": 109,
    "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/mumarinex"
  },
  "_devurl": "https://github.com/nathan-chauvel/mumarinex",
  "_searchresults": 0,
  "_rbuild": "4.6.0",
  "_assets": [
    "extra/citation.cff",
    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
    "extra/contents.json",
    "extra/mumarinex.html",
    "extra/NEWS.html",
    "extra/NEWS.txt",
    "extra/readme.html",
    "extra/readme.md",
    "manual.pdf"
  ],
  "_homeurl": "https://github.com/nathan-chauvel/mumarinex",
  "_realowner": "nathan-chauvel",
  "_cranurl": true,
  "_releases": [
    {
      "version": "1.0",
      "date": "2025-10-14"
    }
  ],
  "_exports": [
    "decomplot",
    "diagnostic_tool",
    "mum_GUI",
    "mumarinex"
  ],
  "_datasets": [
    {
      "name": "Simulated_data",
      "title": "Simulated_data",
      "object": "Simulated_data",
      "file": "Simulated_data.rda",
      "class": [
        "data.frame"
      ],
      "fields": [
        "Sp_A",
        "Sp_B",
        "Sp_C",
        "Sp_D",
        "Sp_E",
        "Sp_F",
        "Sp_G",
        "Sp_H",
        "Sp_I",
        "Sp_J",
        "Sp_K",
        "Sp_L"
      ],
      "rows": 50,
      "table": true,
      "tojson": true
    }
  ],
  "_help": [
    {
      "page": "decomplot",
      "title": "Decomposition of the MUMARINEX value into its three sub-indices and representation as boxplots",
      "topics": [
        "decomplot"
      ]
    },
    {
      "page": "diagnostic_tool",
      "title": "Diagnostic tool to identify the key components that best explain the MUMARINEX sub-indices",
      "topics": [
        "diagnostic_tool"
      ]
    },
    {
      "page": "mum_GUI",
      "title": "Online Graphical User Interface to compute MUMARINEX",
      "topics": [
        "mum_GUI"
      ]
    },
    {
      "page": "mumarinex",
      "title": "MUMARINEX and subindices computation",
      "topics": [
        "mumarinex"
      ]
    },
    {
      "page": "Simulated_data",
      "title": "Simulated_data",
      "topics": [
        "Simulated_data"
      ]
    }
  ],
  "_pkglogo": "https://github.com/nathan-chauvel/mumarinex/raw/HEAD/man/figures/logo.png",
  "_readme": "https://github.com/nathan-chauvel/mumarinex/raw/HEAD/README.md",
  "_rundeps": [
    "cluster",
    "evaluate",
    "highr",
    "knitr",
    "lattice",
    "MASS",
    "Matrix",
    "mgcv",
    "nlme",
    "permute",
    "vegan",
    "xfun",
    "yaml"
  ],
  "_vignettes": [
    {
      "source": "Using-the-MUMARINEX-Package.Rmd",
      "filename": "Using-the-MUMARINEX-Package.html",
      "title": "Using the MUMARINEX Package",
      "author": "Nathan Chauvel",
      "engine": "knitr::rmarkdown",
      "headings": [
        "Introduction",
        "Install and load the package",
        "Data format",
        "Compute the MUMARINEX index and its sub-indices (SCSR, CBCS and SPI)",
        "Visualize sub-indices results with dedicated plotting functions",
        "Generate diagnostics to interpret sub-indices variations"
      ],
      "created": "2026-04-28 18:28:57",
      "modified": "2026-05-26 18:46:54",
      "commits": 3
    }
  ],
  "_score": 4.301029995663981,
  "_indexed": true,
  "_nocasepkg": "mumarinex",
  "_universes": [
    "nathan-chauvel"
  ],
  "_binaries": [
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "2.0",
      "date": "2026-06-03T21:53:15.000Z",
      "distro": "noble",
      "commit": "7d19ff353ccb37231f3d4233ec70f93f5d22973c",
      "fileid": "590332543ae3f7e96bfb3c6b845d8663c78d04d638839d38677fdf3bf5b6718c",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/nathan-chauvel/actions/runs/26915081937"
    },
    {
      "r": "4.6.0",
      "os": "linux",
      "version": "2.0",
      "date": "2026-06-03T21:53:51.000Z",
      "distro": "noble",
      "commit": "7d19ff353ccb37231f3d4233ec70f93f5d22973c",
      "fileid": "3289da0064660b2778d3a073b2548c7a1f5a73150535cbb19e516a45babde2ee",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/nathan-chauvel/actions/runs/26915081937"
    },
    {
      "r": "4.5.3",
      "os": "mac",
      "version": "2.0",
      "date": "2026-06-03T21:52:38.000Z",
      "commit": "7d19ff353ccb37231f3d4233ec70f93f5d22973c",
      "fileid": "d4f9d9996150169c064cc75a0c1f304ffa2d32629fc318c1853008f828576465",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/nathan-chauvel/actions/runs/26915081937"
    },
    {
      "r": "4.6.0",
      "os": "mac",
      "version": "2.0",
      "date": "2026-06-03T21:53:17.000Z",
      "commit": "7d19ff353ccb37231f3d4233ec70f93f5d22973c",
      "fileid": "4b7fa349720f3ff4b0f9bd0643e64211c71943f1c10e9b25b533f76db02cdaf1",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/nathan-chauvel/actions/runs/26915081937"
    },
    {
      "r": "4.6.0",
      "os": "wasm",
      "version": "2.0",
      "date": "2026-06-03T21:53:21.000Z",
      "commit": "7d19ff353ccb37231f3d4233ec70f93f5d22973c",
      "fileid": "90163d16656d40167a501a724d258bf35e0d97a31ee01d1dee119f05e281bc83",
      "status": "success",
      "buildurl": "https://github.com/r-universe/nathan-chauvel/actions/runs/26915081937"
    },
    {
      "r": "4.7.0",
      "os": "win",
      "version": "2.0",
      "date": "2026-06-03T21:52:34.000Z",
      "commit": "7d19ff353ccb37231f3d4233ec70f93f5d22973c",
      "fileid": "34db11618a10d7e56185f799f9d8a9cbc2382a7203ba0c62d0cb37e096b35ee2",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/nathan-chauvel/actions/runs/26915081937"
    },
    {
      "r": "4.5.3",
      "os": "win",
      "version": "2.0",
      "date": "2026-06-03T21:52:57.000Z",
      "commit": "7d19ff353ccb37231f3d4233ec70f93f5d22973c",
      "fileid": "9d61df8dfc5a10637ccdaf4c31b7de5b605884ed4b3423154737fac8fe509b76",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/nathan-chauvel/actions/runs/26915081937"
    },
    {
      "r": "4.6.0",
      "os": "win",
      "version": "2.0",
      "date": "2026-06-03T21:52:32.000Z",
      "commit": "7d19ff353ccb37231f3d4233ec70f93f5d22973c",
      "fileid": "a82e3686e844f4c8660a66bdd5eca3cdbe27a516422e226c2f1af06a3af73b50",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/nathan-chauvel/actions/runs/26915081937"
    }
  ]
}