{
  "_id": "6ae5ae818d250e7ad09f3536",
  "Package": "mumarinex",
  "Title": "Computation of the Multivariate Marine Recovery Index",
  "Version": "2.0",
  "Authors@R": "person(\"Nathan\", \"Chauvel\", email = \"nathan.chauvel@outlook.fr\", role = c(\"aut\", \"cre\"), comment = c(ORCID = \"0000-0002-8464-9944\"))",
  "Description": "Computation of the multivariate marine recovery index,\nincluding functions for data visualization and ecological\ndiagnostics of marine ecosystems. The computational details are\ndescribed in the original publication.",
  "Reference": "Chauvel, N., Grall, J., Thiébaut, E., Houbin, C., Pezy,\nJ.-P., 2026. A general-purpose multivariate marine recovery\nindex (MUMARINEX) for quantifying the influence of human\nactivities on benthic habitat ecological status. Ecological\nIndicators 188, 115002.\nhttps://doi.org/10.1016/j.ecolind.2026.115002",
  "License": "GPL-3",
  "Encoding": "UTF-8",
  "Roxygen": "list(markdown = TRUE)",
  "RoxygenNote": "8.0.0",
  "VignetteBuilder": "knitr",
  "Collate": "'Simulated_data.R' 'decomplot.R' 'mumarinex.R'\n'diagnostic_tool.R' 'mum_GUI.R'",
  "URL": "https://github.com/Nathan-Chauvel/mumarinex",
  "BugReports": "https://github.com/Nathan-Chauvel/mumarinex/issues",
  "Repository": "https://nathan-chauvel.r-universe.dev",
  "Date/Publication": "2026-06-03 18:44:44 UTC",
  "RemoteUrl": "https://github.com/nathan-chauvel/mumarinex",
  "RemoteRef": "HEAD",
  "RemoteSha": "7d19ff353ccb37231f3d4233ec70f93f5d22973c",
  "NeedsCompilation": "no",
  "Packaged": {
    "Date": "2026-10-31 08:26:43 UTC",
    "User": "root"
  },
  "Author": "Nathan Chauvel [aut, cre] (ORCID:\n<https://orcid.org/0000-0002-8464-9944>)",
  "Maintainer": "Nathan Chauvel <nathan.chauvel@outlook.fr>",
  "_user": "nathan-chauvel",
  "_type": "src",
  "_file": "mumarinex_2.0.tar.gz",
  "_fileid": "https://r2.ropensci.org/18c4f4ede7e801a90e5d02caa27ac0090dbb3a2e6f54277c4c13c44e4d5cd025",
  "_filesize": 232675,
  "_sha256": "18c4f4ede7e801a90e5d02caa27ac0090dbb3a2e6f54277c4c13c44e4d5cd025",
  "_expires": "2027-02-08T09:01:51.000Z",
  "_created": "2026-10-31T08:26:43.000Z",
  "_published": "2026-10-31T09:01:53.338Z",
  "_upstream": "https://github.com/nathan-chauvel/mumarinex",
  "_status": "success",
  "_maintainer": {
    "name": "Nathan Chauvel",
    "email": "nathan.chauvel@outlook.fr",
    "login": "nathan-chauvel",
    "linkedin": "in/nathan-chauvel-02202a160",
    "description": "",
    "uuid": 280098866,
    "orcid": "0000-0002-8464-9944"
  },
  "_jobs": [
    {
      "job": 124488989785,
      "time": 162,
      "config": "linux-devel-x86_64",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "13036427711"
    },
    {
      "job": 124488989787,
      "time": 118,
      "config": "linux-release-x86_64",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "13036256831"
    },
    {
      "job": 124488989798,
      "time": 216,
      "config": "macos-oldrel-arm64",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "13036364439"
    },
    {
      "job": 124488989786,
      "time": 129,
      "config": "macos-release-arm64",
      "r": "4.6.2",
      "check": "OK",
      "artifact": "13036988937"
    },
    {
      "job": 124488412859,
      "time": 167,
      "config": "source",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "13036451365"
    },
    {
      "job": 124488989806,
      "time": 113,
      "config": "wasm-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "13036497445"
    },
    {
      "job": 124488989904,
      "time": 87,
      "config": "windows-devel-x86_64",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "13035877425"
    },
    {
      "job": 124488989829,
      "time": 93,
      "config": "windows-oldrel-x86_64",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "13036896070"
    },
    {
      "job": 124488989880,
      "time": 95,
      "config": "windows-release-x86_64",
      "r": "4.6.2",
      "check": "OK",
      "artifact": "13036532154"
    }
  ],
  "_buildurl": "https://github.com/r-universe/nathan-chauvel/actions/runs/41184444778",
  "_commit": {
    "id": "7d19ff353ccb37231f3d4233ec70f93f5d22973c",
    "author": "Nathan-Chauvel <nathan.chauvel@outlook.fr>",
    "committer": "Nathan-Chauvel <nathan.chauvel@outlook.fr>",
    "message": "Merge branch 'master' of https://github.com/Nathan-Chauvel/mumarinex\n",
    "time": 1780512284
  },
  "_distro": "resolute",
  "_host": "GitHub-Actions",
  "_registered": true,
  "_dependencies": [
    {
      "package": "R",
      "version": ">= 3.5.0",
      "role": "Depends"
    },
    {
      "package": "knitr",
      "role": "Imports"
    },
    {
      "package": "vegan",
      "role": "Imports"
    },
    {
      "package": "utils",
      "role": "Imports"
    },
    {
      "package": "rmarkdown",
      "role": "Suggests"
    }
  ],
  "_owner": "nathan-chauvel",
  "_selfowned": true,
  "_usedby": 0,
  "_updates": [
    {
      "week": "2026-18",
      "n": 2
    },
    {
      "week": "2026-21",
      "n": 2
    },
    {
      "week": "2026-22",
      "n": 1
    },
    {
      "week": "2026-23",
      "n": 4
    }
  ],
  "_tags": [],
  "_stars": 0,
  "_contributors": [
    {
      "user": "nathan-chauvel",
      "count": 11,
      "uuid": 280098866
    }
  ],
  "_userbio": {
    "uuid": 280098866,
    "type": "user",
    "name": "Nathan Chauvel",
    "followers": 0
  },
  "_downloads": {
    "count": 238,
    "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/mumarinex"
  },
  "_devurl": "https://github.com/nathan-chauvel/mumarinex",
  "_searchresults": 0,
  "_rbuild": "4.6.1",
  "_assets": [
    "extra/citation.cff",
    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
    "extra/contents.json",
    "extra/manual.pdf",
    "extra/mumarinex.html",
    "extra/NEWS.html",
    "extra/NEWS.txt",
    "extra/readme.html",
    "extra/readme.md"
  ],
  "_homeurl": "https://github.com/nathan-chauvel/mumarinex",
  "_realowner": "nathan-chauvel",
  "_cranurl": true,
  "_releases": [
    {
      "version": "1.0",
      "date": "2025-10-14"
    },
    {
      "version": "2.0",
      "date": "2026-06-05"
    }
  ],
  "_exports": [
    "decomplot",
    "diagnostic_tool",
    "mum_GUI",
    "mumarinex"
  ],
  "_datasets": [
    {
      "name": "Simulated_data",
      "title": "Simulated_data",
      "object": "Simulated_data",
      "file": "Simulated_data.rda",
      "class": [
        "data.frame"
      ],
      "fields": [
        "Sp_A",
        "Sp_B",
        "Sp_C",
        "Sp_D",
        "Sp_E",
        "Sp_F",
        "Sp_G",
        "Sp_H",
        "Sp_I",
        "Sp_J",
        "Sp_K",
        "Sp_L"
      ],
      "rows": 50,
      "table": true,
      "tojson": true
    }
  ],
  "_help": [
    {
      "page": "decomplot",
      "title": "Decomposition of the MUMARINEX value into its three sub-indices and representation as boxplots",
      "topics": [
        "decomplot"
      ]
    },
    {
      "page": "diagnostic_tool",
      "title": "Diagnostic tool to identify the key components that best explain the MUMARINEX sub-indices",
      "topics": [
        "diagnostic_tool"
      ]
    },
    {
      "page": "mum_GUI",
      "title": "Online Graphical User Interface to compute MUMARINEX",
      "topics": [
        "mum_GUI"
      ]
    },
    {
      "page": "mumarinex",
      "title": "MUMARINEX and subindices computation",
      "topics": [
        "mumarinex"
      ]
    },
    {
      "page": "Simulated_data",
      "title": "Simulated_data",
      "topics": [
        "Simulated_data"
      ]
    }
  ],
  "_pkglogo": "https://github.com/nathan-chauvel/mumarinex/raw/HEAD/man/figures/logo.png",
  "_readme": "https://github.com/nathan-chauvel/mumarinex/raw/HEAD/README.md",
  "_rundeps": [
    "cluster",
    "evaluate",
    "highr",
    "knitr",
    "lattice",
    "MASS",
    "Matrix",
    "mgcv",
    "nlme",
    "permute",
    "vegan",
    "xfun",
    "yaml"
  ],
  "_vignettes": [
    {
      "source": "Using-the-MUMARINEX-Package.Rmd",
      "filename": "Using-the-MUMARINEX-Package.html",
      "title": "Using the MUMARINEX Package",
      "author": "Nathan Chauvel",
      "engine": "knitr::rmarkdown",
      "headings": [
        "Introduction",
        "Install and load the package",
        "Data format",
        "Compute the MUMARINEX index and its sub-indices (SCSR, CBCS and SPI)",
        "Visualize sub-indices results with dedicated plotting functions",
        "Generate diagnostics to interpret sub-indices variations"
      ],
      "created": "2026-04-28 18:28:57",
      "modified": "2026-05-26 18:46:54",
      "commits": 3
    }
  ],
  "_score": 4.301029995663981,
  "_indexed": true,
  "_nocasepkg": "mumarinex",
  "_universes": [
    "nathan-chauvel"
  ],
  "_binaries": [
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "2.0",
      "date": "2026-10-31T08:29:11.000Z",
      "distro": "resolute",
      "commit": "7d19ff353ccb37231f3d4233ec70f93f5d22973c",
      "fileid": "https://r2.ropensci.org/efde4b01f8a7236f4cd34f59b5f05cf4f95607fb74f73053079313fee81350c0",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/nathan-chauvel/actions/runs/41184444778"
    },
    {
      "r": "4.6.1",
      "os": "linux",
      "version": "2.0",
      "date": "2026-10-31T08:28:34.000Z",
      "distro": "resolute",
      "commit": "7d19ff353ccb37231f3d4233ec70f93f5d22973c",
      "fileid": "https://r2.ropensci.org/56ae8ecb80d5048339ea88522cebd5973376c29d8bf68c6c3762eee2df665a8a",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/nathan-chauvel/actions/runs/41184444778"
    },
    {
      "r": "4.5.3",
      "os": "mac",
      "version": "2.0",
      "date": "2026-10-31T09:00:14.000Z",
      "commit": "7d19ff353ccb37231f3d4233ec70f93f5d22973c",
      "fileid": "https://r2.ropensci.org/42f6255ad15e1872ef84557c22ea7337a69f8106c399240bd8012bd5cb022f00",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/nathan-chauvel/actions/runs/41184444778"
    },
    {
      "r": "4.6.2",
      "os": "mac",
      "version": "2.0",
      "date": "2026-10-31T08:54:27.000Z",
      "commit": "7d19ff353ccb37231f3d4233ec70f93f5d22973c",
      "fileid": "https://r2.ropensci.org/844854ef2bbdbc2d0e7f3c7878992eebdd08ca2da26c9ad1be94c8c0516d17be",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/nathan-chauvel/actions/runs/41184444778"
    },
    {
      "r": "4.6.0",
      "os": "wasm",
      "version": "2.0",
      "date": "2026-10-31T08:29:02.000Z",
      "commit": "7d19ff353ccb37231f3d4233ec70f93f5d22973c",
      "fileid": "https://r2.ropensci.org/aad7739758a4320305373982d89905a14e7d87eae9d403652d923c594db05c65",
      "status": "success",
      "buildurl": "https://github.com/r-universe/nathan-chauvel/actions/runs/41184444778"
    },
    {
      "r": "4.7.0",
      "os": "win",
      "version": "2.0",
      "date": "2026-10-31T08:27:59.000Z",
      "commit": "7d19ff353ccb37231f3d4233ec70f93f5d22973c",
      "fileid": "https://r2.ropensci.org/74336959658edaa0ffaa5132ced2a7f96ed886d3887660bce53bf30fffdb4376",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/nathan-chauvel/actions/runs/41184444778"
    },
    {
      "r": "4.5.3",
      "os": "win",
      "version": "2.0",
      "date": "2026-10-31T08:28:01.000Z",
      "commit": "7d19ff353ccb37231f3d4233ec70f93f5d22973c",
      "fileid": "https://r2.ropensci.org/5aeacd835474e8b2d1147404408b2a0cf705c230ff60952d93fcbaac34f2e171",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/nathan-chauvel/actions/runs/41184444778"
    },
    {
      "r": "4.6.2",
      "os": "win",
      "version": "2.0",
      "date": "2026-10-31T08:28:00.000Z",
      "commit": "7d19ff353ccb37231f3d4233ec70f93f5d22973c",
      "fileid": "https://r2.ropensci.org/0eece8b598aeccc27bc6441dba4b387c65aaeb6c7c08312b0d85dc043b8b43b3",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/nathan-chauvel/actions/runs/41184444778"
    }
  ]
}